Deterministic Versus Stochastic Cell Polarisation Through Wave-Pinning

نویسندگان

  • Georg R. Walther
  • Athanasius F. M. Marée
  • Leah Edelstein-Keshet
  • Verônica A. Grieneisen
چکیده

Cell polarization is an important part of the response of eukaryotic cells to stimuli, and forms a primary step in cell motility, differentiation, and many cellular functions. Among the important biochemical players implicated in the onset of intracellular asymmetries that constitute the early phases of polarization are the Rho GTPases, such as Cdc42, Rac, and Rho, which present high active concentration levels in a spatially localized manner. Rho GTPases exhibit positive feedback-driven interconversion between distinct active and inactive forms, the former residing on the cell membrane, and the latter predominantly in the cytosol. A deterministic model of the dynamics of a single Rho GTPase described earlier by Mori et al. exhibits sustained polarization by a wave-pinning mechanism. It remained, however, unclear how such polarization behaves at typically low cellular concentrations, as stochasticity could significantly affect the dynamics. We therefore study the low copy number dynamics of this model, using a stochastic kinetics framework based on the Gillespie algorithm, and propose statistical and analytic techniques which help us analyse the equilibrium behaviour of our stochastic system. We use local perturbation analysis to predict parameter regimes for initiation of polarity and wave-pinning in our deterministic system, and compare these predictions with deterministic and stochastic spatial simulations. Comparing the behaviour of the stochastic with the deterministic system, we determine the threshold number of molecules required for robust polarization in a given effective reaction volume. We show that when the molecule number is lowered wave-pinning behaviour is lost due to an increasingly large transition zone as well as increasing fluctuations in the pinning position, due to which a broadness can be reached that is unsustainable, causing the collapse of the wave, while the variations in the high and low equilibrium levels are much less affected.

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Uncertainty in fundamental natural frequency estimation for alluvial deposits

Seismic waves are filtered as they pass through soil layers, from bedrock to surface. Frequencies and amplitudes of the response wave are affected due to this filtration effect and this will result in different ground motion characteristics. Therefore, it is important to consider the impact of the soil properties on the evaluation of earthquake ground motions for the design of structures. Soil ...

متن کامل

Cellular polarization: interaction between extrinsic bounded noises and the wave-pinning mechanism.

Cell polarization (cued or uncued) is a fundamental mechanism in cell biology. As an alternative to the classical Turing bifurcation, it has been proposed that the onset of cell polarity might arise by means of the well-known phenomenon of wave-pinning [Gamba et al., Proc. Natl. Acad. Sci. USA 102, 16927 (2005)]. A particularly simple and elegant deterministic model of cell polarization based o...

متن کامل

Robust inter and intra-cell layouts design model dealing with stochastic dynamic problems

In this paper, a novel quadratic assignment-based mathematical model is developed for concurrent design of robust inter and intra-cell layouts in dynamic stochastic environments of manufacturing systems. In the proposed model, in addition to considering time value of money, the product demands are presumed to be dependent normally distributed random variables with known expectation, variance, a...

متن کامل

Insight into spontaneous recurrent calcium waves in a 3-D cardiac cell based on analysis of a 1-D deterministic model

Calcium dynamics in a cardiac cell are described by a system of 3-D non-linear stochastic partial differential equations. To obtain solutions that have biophysical properties, it is necessary to explore the model parameter space. To decrease the complexity of the parameter search, we reduce the 3-D stochastic model to a 1-D deterministic model. The reduction of the problem from 3-D to 1-D is do...

متن کامل

A numerical model to investigate the polarisation azimuth of ULF waves through an ionosphere with oblique magnetic fields

A one dimensional, computational model for the propagation of ultra low frequency (ULF; 1–100 mHz) wave fields from the Earth’s magnetosphere through the ionosphere, atmosphere and into the ground is presented. The model is formulated to include solutions for high latitudes where the Earth’s magnetic field, (B0), is near vertical and for oblique magnetic fields applicable at lower latitudes. Th...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره 74  شماره 

صفحات  -

تاریخ انتشار 2012